UGlib Examples

Note: The Examples assume you have selected the tool initiated with Mouse Mammary/MammaryGland Focused libraries

1. Get all the Clusters in "Soares_mouse_mammary_gland_NMLMG", ordering them by the number of sequences from Group A in the cluster:
   • Click on the "radio" button in "A" column for "Soares_mouse_mammary_gland_NMLMG" library
   • Choose Results ordered by "A frequency"
   • Click "Preview"
   
   
2. Get all the Clusters Unique to "Soares_mouse_mammary_gland_NMLMG", ordering them by the number of sequences from Group A in the cluster:
   • Click on the "radio" button in "A" column for "Soares_mouse_mammary_gland_NMLMG" library
   • Check the "NOT in all others" checkbox
   • Click "Preview"
   • Choose Results ordered by "A frequency"
   • Click "Preview"
   
   
3. Get all the Clusters with a member in the NCI_CGAP_Mamx or "Soares_mouse_mammary_gland_NMLMG" libraries, ordering them by the number of sequences from Group A in the cluster:
   • Click on the "radio" button in "A" column for the NCI_CGAP_Mam1, NCI_CGAP_Mam2, ..., NCI_CGAP_Mam6, and "Soares_mouse_mammary_gland_NMLMG" libraries
   • Choose Results ordered by "A frequency"
   • Click "Preview"
   
   
4. Get all the Clusters with a member in the "NCI_CGAP_Mamx" libraries AND "Soares_mouse_mammary_gland_NMLMG" library, ordering them by the number of sequences from Group A and Group B in the cluster:
   • Click on the "radio" button in "A" column for the NCI_CGAP_Mam1, NCI_CGAP_Mam2, ..., NCI_CGAP_Mam6
   • Click on the "radio" button in the "B" column for the Soares_mouse_mammary_gland_NMLMG" library
   • Click the "and" "radio" button (Between the "A" and "B" at the top of the form)
   • Choose Results ordered by "A+B frequency"
   • Click "Preview"
   
   
5. Get all the Clusters with a member in the "NCI_CGAP_MAMx" libraries AND NOT in "Soares_mouse_mammary_gland_NMLMG" library, ordering them by the size of the cluster:
   • Click on the "radio" button in "A" column for each of the NCI_CGAP_Mam1, NCI_CGAP_Mam2, ..., NCI_CGAP_Mam6 libraries
   • Click on the "radio" button in the "B" column for the Soares_mouse_mammary_gland_NMLMG" library
   • Click the "not" "radio" button (Between the "A" and "B" at the top of the form)
   • Choose Results ordered by "Total size"
   • Click "Preview"
   
   
6. Get all the Clusters with a member in "Soares_mouse_mammary_gland_NMLMG" AND NOT in the "NCI_CGAP_MAMx" libraries, ordering them by the size of the cluster:
   • Click on the "radio" button in the "A" column for the Soares_mouse_mammary_gland_NMLMG" library
   • Click on the "radio" button in "B" column for each of the NCI_CGAP_Mam1, NCI_CGAP_Mam2, ..., NCI_CGAP_Mam6 libraries
   • Click the "not" "radio" button (Between the "A" and "B" at the top of the form)
   • Choose Results ordered by "Total size"
   • Click "Preview"
   
   

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